Welcome to the home page of Brian Ruttenberg!
I am currently a PhD student at the University of California, Santa Barbara, under the tutelage of Professor Ambuj Singh in the Data Mining and Bioinformatics Lab. My research focuses on data mining and modeling of biological, image and uncertain data. I received by BSE in Computer Engineering at the University of Michigan, Ann Arbor. I joined the computer science program at UCSB in 2006.
Papers
B. E. Ruttenberg, G. Luna, G. P. Lewis, S. K. Fisher, and A. K. Singh. Quantification of astrocyte-vascular spatial relationships in murine retina PLoS One (Under Review)
B.E. Ruttenberg and A.K. Singh. Indexing the Earth Mover's Distance Using Normal Distributions Proceedings of the VLDB Endowment 5(3):205-216, 2011
P. Suwannatat, G. Luna, B. Ruttenberg, R. Raviv, G. Lewis, S.K. Fisher, and T. Hollerer. INTERACTIVE VISUALIZATION OF RETINAL ASTROCYTE IMAGES. IEEE International Symposium on Biomedical Imaging, 242-245, 2011.
Brian E. Ruttenberg, Trairak Pisitkun, Mark A. Knepper, and Jason D. Hoffert. PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data. Journal of Proteome Research, 7(7):3054–3059, 2008.
Nicholas D. Larusso, Brian E. Ruttenberg, Ambuj K. Singh, and Todd H. Oakley. Type II Opsins: Evolutionary Origin by Internal Domain Duplication? Journal of Molecular Evolution, 66(5):417– 423, 2008.
Panapat Uawithya, Trairak Pisitkun, Brian E. Ruttenberg, and Mark A. Knepper. Transcriptional Profiling of Native Inner Medullary Collecting Duct Cells From Rat Kidney. Physiol. Genomics, 32(2):229–253, 2008.
Posters and Talks
B. E. Ruttenberg, N. Larusso, and A. K. Singh, “Spatial Modularity in Biological Networks,” in Automated Imaging and High Throughput Phenotyping, Cold Spring Harbor Lab, 2012, Selected Talk.
B.E. Ruttenberg and A.K. Singh, Spatial Modeling and Mining of the Retina, in Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining, 2010.
N. Larusso, B. E. Ruttenberg, and A. K. Singh, Probabilistic Analysis of Retinal Neuron Morphology, in Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining, 2008.
N. Larusso, B. E. Ruttenberg, and A. K. Singh, Probabilistic Analysis of Ganglion Cell Morphology, in UCSB Graduate Student Workshop on Computing, 2007.