- Kolpas, H. Li, Ian Couzin, J. Moehlis and L. Petzold: "Spatial Position and Information Transfer in a Schooling Model," submitted, 2008.
- H. Li, A. Kolpas, L. Petzold and J. Moehlis: Efficient Parallel Simulation of an Individual-Based Fish Schooling Model on a Graphics Processing Unit," to appear, Grace Hopper Celebration of Women in Computing, 2008.
- H. Li, A. Kolpas, L. Petzold and J. Moehlis: "Accelerating Simulation of an Individual-Based Fish Schooling Model on a Graphics Processing Unit," to appear, NVISION, 2008.
- H. Li and L. Petzold: "Efficient Parallel Simulation for Stochastic Simulation of Biochemical Systems on the Graphics Processing Unit," 13th SIAM Conference on Parallel Processing for Scientific Computing, Atlanta, Georgia, 2008.
- H. Li, Y. Cao, L. Petzold and D. Gillespie: "Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems," Biotechnology Progress, 24, 56-61, 2008.
- H. Li, A. Kolpas, L. Petzold and J. Moehlis: "Parallel Simulation for a Fish Schooling Model on a General-Purpose Graphics Processing Unit," to appear, Concurrency and Computation: Practice and Experience journal, 2007.
- H. Li and L. Petzold: "Stochastic Simulation of Biochemical Systems on the Graphics Processing Unit," Submitted, 2007.
- H. Li and L. Petzold: StochKit : A Stochastic Simulation Toolkit, ICB Army-Industry Collaboration Conference, May, 2006
- H. Li and L. Petzold: "Logarithmic Direct Method for Discrete Stochastic Simulation of Chemically Reacting Systems," Technical Report, 2006.
- Hong Li, Linda R. Petzold, Stochastic Simulation Toolkit for Chemically Reacting Systems, feedback and dynamics in nature, October, 2006, San Diego, California
- H. Li and Linda Petzold, "StochKit in a Nutshell - Introduction and Use", http://www.engr.ucsb.edu/~cse/
- Y. Cao, Andrew Hall, Hong Li and Sotiria Lampoudi, "User's Guide for StochKit", http://www.engr.ucsb.edu/~cse/
- H. Li, Y. Cao and L. Petzold: "StochKit -- A Stochastic Simulation Toolkit," Harvey Mudd Mathematics Conference on Scientific Computing, Claremont, California, November 2005.
- Y. Cao, S. Lampoundi, H. Li and L. Petzold: "A Software Package for Discrete Stochastic Simulation of Chemically Reacting Systems," 4th SIAM conference on Computational Science and Engineering, Orlando, Florida, February 2005.
- Y. Cao, H. Li and L. Petzold: "Efficient Formulation of the Stochastic Simulation Algorithm for Chemically Reacting System," 5th International Conference on Systems Biology (ICSB 2004), Heidelberg, Germany, October 2004.
- Y. Cao, H. Li and L. R. Petzold: "Efficient Formulation of the Stochastic Simulation Algorithm for Chemically Reacting Systems," Journal of Chemical Physics, 121 (9), 4059-4067, 2004.
- H. Li, Kevin Sanft, and L. Petzold: "Optimal Static Heap for Discrete Stochastic Simulation of Chemically Reacting Systems," in preparation, 2008.