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Mendeley

I recently started using a great tool for managing scientific libraries called Mendeley. Below is a link to my public library on Mendeley:

Graph Querying

James Cheng, Yiping Ke, Wilfred Ng, An Lu, FG-Index: Towards Verification-Free Query Processing on Graph Databases, SIGMOD, 2007.

Peixiang Zhao, Jeffrey Xu Yu, Philip S. Yu, Graph Indexing: Tree + Delta >= Tree, VLDB, 2007

Xiafeng Yan, Philip S. Yu, Jiawei Han, Graph indexing: A Frequent Structure-based Approach, SIGMOD 2004

D. Shasha, J. T. L. Wang, and R. Giugno. "Algorithmics and Applications of Tree and Graph Searching". In Proc. PODS'02 Proceeding of the International Conference in Pattern recognition (ICPR), Quebec, Canada, August 2002

Huahai He, Ambuj K. Singh, Closure-Tree: An Index Structure for Graph Queries, ICDE, 2006

Yiping Ke, James Cheng, Wilfred Ng. Correlation Search in Graphs. KDD, 2007

Graph Mining

Yun Chi, Yirong Yang, Richard Muntz, Mining Frequent Rooted Trees and Free Trees Using Canonical Forms, UCLA Technical Report, 2003

X. Yan, J. Han, gSpan: Graph-based substructure pattern mining, ICDM, 2002

Protein Function Prediction

E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, and M. Singh. Whole-proteome prediction of protein function via graphtheoretic analysis of interaction maps. Bioinformatics,21:i302–i310, 2005.

H. Chua, W. Sung, and L. Wong. Exploiting indirect neighbors and topological weight to predict protein function from protein-protein interactions. Bioinformatics, 2006.

H. Hishigaki, K. Nakai, T. Ono, A. Tanigami, and T. Takagi. Assessment of prediction accuracy of protein function from protein–protein interaction data. Yeast, 2001.

B. Schwikowski, P. Uetz, and S. Fields. A network of proteinprotein interactions in yeast. Nature, 2000.

Gaurav Pandey, Michael Steinbach, Rohit Gupta, Tushar Garg, Vipin Kumar. Association Analysis-based Transformations for Protein Interaction Networks: A Function Prediction Case Study. KDD, 2007 Z. Barutcuoglu, R. Schapire, and O. Troyanskaya. Hierarchical multi-label prediction of gene function. Bioinformatics, 2006.